Basic Information
Locus ID:
COCNU_15G002740
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 5897243 | 5905314 | - | COCNU_15G002740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 101,807.37 Da | 48.05 | 81.93 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 398 | 558 | 2.58274E-62 | - |
| CDD | cd18794 | SF2_C_RecQ | 559 | 691 | 1.31864E-72 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 412 | 481 | 2.4E-5 | IPR011545 |
| Pfam | PF09382 | RQC domain | 782 | 893 | 5.6E-22 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 693 | 774 | 5.2E-15 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 575 | 681 | 2.2E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 377 | 700 | 2.21E-28 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 557 | 828 | 2.05E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 444 | 558 | 2.2E-29 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 559 | 777 | 1.9E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 373 | 443 | 3.1E-21 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 782 | 893 | 1.7E-20 | IPR036388 |
| SMART | SM00490 | helicmild6 | 601 | 682 | 3.0E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 406 | 567 | 9.6E-9 | IPR014001 |
| SMART | SM00956 | RQC_2 | 784 | 895 | 6.5E-23 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 443 | 835 | 5.2E-108 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 591 | 633 | 9.331974 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 576 | 723 | 19.915016 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 418 | 551 | 14.438709 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 503 | 512 | - | IPR002464 |
| Coils | Coil | Coil | 267 | 287 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_019708223.1 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Elaeis guineensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0NDZ6 | ATP-dependent DNA helicase OS=Cocos nucifera OX=13894 GN=COCNU_15G002740 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology