Basic Information
Locus ID:
COCNU_15G002610
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 5628808 | 5633530 | + | COCNU_15G002610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 28,251.60 Da | 42.61 | 96.77 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 4 | 137 | 1.9692E-44 | IPR044744 |
| Pfam | PF02225 | PA domain | 35 | 116 | 5.4E-13 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 53 | 125 | 4.71E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 228 | 5.74E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 236 | 1.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 17 | 129 | 1.7E-26 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_010930790.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X1 [Elaeis guineensis] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0NDB6 | Putative Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Cocos nucifera OX=13894 GN=COCNU_15G002610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology