Basic Information
Locus ID:
COCNU_15G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Alkaline and neutral invertase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 30309 | 47395 | - | COCNU_15G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 99,525.26 Da | 39.45 | 83.61 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 24 | 221 | 9.2E-50 | IPR023801 |
| Pfam | PF12899 | Alkaline and neutral invertase | 763 | 831 | 1.6E-21 | IPR024746 |
| Pfam | PF12899 | Alkaline and neutral invertase | 447 | 700 | 7.1E-121 | IPR024746 |
| SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 744 | 832 | 1.36E-5 | IPR008928 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 6 | 266 | 6.71E-76 | IPR023696 |
| SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 385 | 693 | 4.62E-31 | IPR008928 |
| Gene3D | G3DSA:1.50.10.10 | - | 435 | 695 | 4.0E-7 | IPR012341 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 211 | 268 | 9.5E-13 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 4 | 210 | 3.7E-75 | IPR037138 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 165 | 180 | 2.9E-16 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 111 | 131 | 1.7E-39 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 59 | 77 | 1.7E-39 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 152 | 168 | 1.7E-39 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 26 | 43 | 1.7E-39 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 90 | 107 | 1.7E-39 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 133 | 156 | 2.9E-16 | IPR000286 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22510.1 | alkaline/neutral invertase. Encodes a chloroplast-targeted alkaline/neutral invertase that is implicated in the development of the photosynthetic apparatus and nitrogen assimilation in seedlings to control the sucrose to hexose ratio. | 0 |
| RefSeq | XP_010940279.1 | neutral/alkaline invertase 3, chloroplastic [Elaeis guineensis] | 0 |
| Q6H6N5 | Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NIN3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0NCT9 | Hist_deacetyl domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_15G000030 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology