Basic Information
Locus ID:
COCNU_14G012920
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
pre-mRNA processing factor 3 (PRP3)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 55671005 | 55710143 | + | COCNU_14G012920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 156,207.52 Da | 54.16 | 66.36 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00202 | ZnF_GATA | 196 | 231 | 1.4687E-11 | IPR000679 |
| Pfam | PF00320 | GATA zinc finger | 197 | 231 | 7.5E-12 | IPR000679 |
| Pfam | PF08572 | pre-mRNA processing factor 3 (PRP3) | 1019 | 1242 | 4.3E-62 | IPR013881 |
| Pfam | PF06203 | CCT motif | 125 | 166 | 2.2E-13 | IPR010402 |
| Pfam | PF06544 | Protein of unknown function (DUF1115) | 1267 | 1389 | 5.8E-38 | IPR010541 |
| Pfam | PF06203 | CCT motif | 275 | 316 | 2.2E-13 | IPR010402 |
| Pfam | PF06200 | tify domain | 58 | 90 | 1.0E-12 | IPR010399 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 193 | 231 | 4.75E-8 | - |
| Gene3D | G3DSA:3.30.50.10 | - | 193 | 304 | 9.9E-11 | IPR013088 |
| SMART | SM00979 | tify_2 | 56 | 91 | 2.3E-9 | IPR010399 |
| SMART | SM00401 | GATA_3 | 191 | 245 | 3.2E-5 | IPR000679 |
| ProSiteProfiles | PS51017 | CCT domain profile. | 275 | 317 | 13.096084 | IPR010402 |
| ProSiteProfiles | PS51320 | Tify domain profile. | 56 | 91 | 15.030717 | IPR010399 |
| ProSiteProfiles | PS51017 | CCT domain profile. | 125 | 167 | 13.096084 | IPR010402 |
| ProSitePatterns | PS00344 | GATA-type zinc finger domain. | 197 | 224 | - | IPR000679 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 338 | - | - |
| Coils | Coil | Coil | 1159 | 1181 | - | - |
| Coils | Coil | Coil | 633 | 656 | - | - |
| Coils | Coil | Coil | 813 | 836 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28060.1 | Pre-mRNA-splicing factor 3. | 0 |
| RefSeq | XP_010923282.2 | protein RDM16 isoform X1 [Elaeis guineensis] | 0 |
| Q9C7E7 | Protein RDM16 OS=Arabidopsis thaliana OX=3702 GN=RDM16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IXT2 | GATA transcription factor 28 OS=Cocos nucifera OX=13894 GN=COCNU_14G012920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14359 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12952 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033457 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g036900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20818, Sbi_jg22947 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16818 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009329 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl61999, Sgl66559 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017731, gene:ENSEOMG00000021852 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0012630, CQ.Regalona.r1.7AG0012570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171920 |
| Apiaceae | Apium graveolens | 2 | Ag8G00800, AgUnG01009 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G013370, COCNU_14G012920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710186, gene-LOC103712035 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3569.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G01717, Ftri18G11679 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G28060.1, AT3G55930.1, AT3G56790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006834m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g24240.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g017330.2N, BniB03g032940.2N, BniB04g042520.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0693 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0701 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g09890 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0624s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8201 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1517 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040145 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G12387, Lb2G12388, Lb2G12429 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1136, BH03.1297, CH03.1460 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0309720, gene-QOZ80_4BG0340890 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0469310.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004142, gene-QYE76_016981, gene-QYE76_027151 |
| Poaceae | Oryza coarctata | 3 | Oco04G010340, Oco17G001010, Oco18G000880 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g07500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G137100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705068, Pt_Chr0705091 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G003810, Chr11G015110, Chr14G006280, Chr21G007210 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G285300, Tel7E01G174000 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG060440, gene_TRIDC4AG060530 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G380600.1, TraesCS5A02G168300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb204030_P002, Zm00001eb238080_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24538 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31942 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g12740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.412, evm.TU.Scaffold_4_RagTag.1671 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26067 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10752, nbisL1-mrna-8483, nbisL1-mrna-8484 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14167, nbisL1-mrna-14168, nbisL1-mrna-4484 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.929 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000184 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17556, nbisL1-mrna-2123 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9504 |
| Salicaceae | Populus euphratica | 2 | populus_peu06361, populus_peu20188 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606062 |
| Solanaceae | Solanum chilense | 2 | SOLCI000212900, SOLCI007045600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018979, gene-LOC107023328 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28756_chr04_+, gene_12281 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3795 |
| Zosteraceae | Zostera marina | 1 | Zosma01g21800.v3.1 |