Basic Information
Locus ID:
COCNU_14G010800
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
WRKY4
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 49435468 | 49463051 | + | COCNU_14G010800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 56,384.81 Da | 43.33 | 58.35 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 230 | 286 | 1.4E-24 | IPR003657 |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 95 | 134 | 4.8E-14 | IPR020189 |
| Pfam | PF03106 | WRKY DNA -binding domain | 390 | 447 | 5.1E-25 | IPR003657 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 96 | 135 | 1.2E-11 | IPR012340 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 381 | 449 | 7.59E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 226 | 288 | 2.35E-26 | IPR036576 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 25 | 103 | 3.96E-26 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 11 | 95 | 1.5E-42 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 96 | 145 | 3.9E-16 | - |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 374 | 450 | 3.6E-35 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 213 | 289 | 8.2E-27 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 389 | 448 | 6.2E-39 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 229 | 287 | 5.6E-36 | IPR003657 |
| SMART | SM01376 | eIF_5a_2 | 95 | 150 | 2.1E-8 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 28 | 130 | 1.5E-35 | IPR001884 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 224 | 288 | 24.695982 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 384 | 449 | 37.367035 | IPR003657 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 60 | 67 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 224 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_010923565.2 | probable WRKY transcription factor 4 isoform X1 [Elaeis guineensis] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IVS6 | Putative Eukaryotic translation initiation factor 5A-4 OS=Cocos nucifera OX=13894 GN=COCNU_14G010800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology