Basic Information
Locus ID:
COCNU_14G008730
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 39046074 | 39052581 | + | COCNU_14G008730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 57,141.35 Da | 47.01 | 94.89 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 79 | 182 | 8.62805E-46 | - |
| Pfam | PF03000 | NPH3 family | 272 | 503 | 4.5E-79 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 87 | 174 | 7.1E-10 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 80 | 174 | 7.14E-19 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 78 | 205 | 4.8E-15 | IPR011333 |
| SMART | SM00225 | BTB_4 | 88 | 187 | 2.3E-6 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 272 | 519 | 66.457268 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 88 | 157 | 12.164062 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_010923667.1 | BTB/POZ domain-containing protein At1g30440 [Elaeis guineensis] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IVS2 | Putative BTB/POZ domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_14G008730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology