Basic Information
Locus ID:
COCNU_14G006400
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 17552977 | 17566827 | + | COCNU_14G006400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 92,304.89 Da | 31.68 | 84.21 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 271 | 2.58414E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 9.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 2.9E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 50 | 86 | 2.6E-4 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 678 | 836 | 2.2E-51 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 293 | 8.63E-72 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 132 | 1.3E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 441 | 1.0E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 9.0E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 7.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 3.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 2.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 7.3E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.860455 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 11.418318 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.817396 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.153581 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 73 | 87 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 1.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 1.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 1.1E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 839 | 19.683323 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 661 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_010905604.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Elaeis guineensis] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0NCF4 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Cocos nucifera OX=13894 GN=COCNU_14G006400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology