Basic Information
Locus ID:
COCNU_14G006360
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 17315484 | 17333544 | - | COCNU_14G006360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 148,823.13 Da | 50.50 | 75.67 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1192 | 1299 | 1.00368E-51 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 586 | 917 | 1.93727E-86 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 604 | 994 | 1.1E-68 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 1033 | 1069 | 7.7E-5 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1190 | 1289 | 1.7E-14 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 926 | 1346 | 3.29E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 567 | 917 | 7.85E-46 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1032 | 1082 | 6.36E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 677 | 770 | 6.9E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 565 | 650 | 9.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 785 | 928 | 1.1E-30 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1030 | 1081 | 1.1E-8 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 1082 | 1347 | 1.9E-54 | IPR027417 |
| SMART | SM00490 | helicmild6 | 1206 | 1289 | 4.0E-15 | IPR001650 |
| SMART | SM00487 | ultradead3 | 582 | 887 | 5.3E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 1033 | 1071 | 0.0035 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1183 | 1342 | 14.138912 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1033 | 1069 | 10.556635 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 601 | 879 | 12.709673 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1048 | 1057 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 780 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 439 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_010924058.1 | helicase-like transcription factor CHR28 isoform X2 [Elaeis guineensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IVC7 | Helicase-like transcription factor CHR28 OS=Cocos nucifera OX=13894 GN=COCNU_14G006360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology