Basic Information
Locus ID:
COCNU_14G006140
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 15845046 | 15850648 | - | COCNU_14G006140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 89,948.36 Da | 46.35 | 75.36 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 425 | 582 | 3.57444E-28 | - |
| CDD | cd12108 | Hr-like | 68 | 196 | 1.22235E-18 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 65 | 198 | 7.2E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 421 | 583 | 6.1E-8 | IPR012312 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 67 | 215 | 9.3E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 417 | 657 | 4.2E-26 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010906998.1 | zinc finger protein BRUTUS isoform X1 [Elaeis guineensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IUY7 | Putative Zinc finger protein BRUTUS OS=Cocos nucifera OX=13894 GN=COCNU_14G006140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology