Basic Information
Locus ID:
COCNU_14G005740
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 14563048 | 14570368 | + | COCNU_14G005740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 55,940.63 Da | 49.27 | 80.55 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 34 | 263 | 4.2888E-151 | - |
| Pfam | PF00850 | Histone deacetylase domain | 48 | 264 | 2.1E-59 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 29 | 320 | 7.19E-86 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 265 | 333 | 1.3E-8 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 27 | 264 | 4.5E-84 | IPR037138 |
| PRINTS | PR01271 | Histone deacetylase signature | 110 | 127 | 9.2E-48 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 231 | 244 | 9.2E-48 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 248 | 266 | 9.2E-48 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 50 | 67 | 9.2E-48 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 185 | 200 | 1.1E-17 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 153 | 176 | 1.1E-17 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 172 | 188 | 9.2E-48 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 131 | 151 | 9.2E-48 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_010924108.1 | histone deacetylase 6 [Elaeis guineensis] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IV02 | histone deacetylase OS=Cocos nucifera OX=13894 GN=COCNU_14G005740 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology