Basic Information
Locus ID:
COCNU_14G005640
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ATP-dependent RNA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 14286752 | 14303792 | + | COCNU_14G005640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 76,091.73 Da | 67.12 | 59.30 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 221 | 350 | 1.31741E-63 | - |
| CDD | cd00201 | WW | 20 | 50 | 5.90598E-5 | IPR001202 |
| Pfam | PF00397 | WW domain | 19 | 49 | 6.7E-8 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 106 | 196 | 4.2E-25 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 232 | 341 | 6.3E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 105 | 357 | 3.3E-66 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 6.04E-9 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 81 | 211 | 4.7E-41 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 19 | 50 | 4.4E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 212 | 383 | 5.4E-59 | IPR027417 |
| SMART | SM00487 | ultradead3 | 11 | 224 | 2.1E-15 | IPR014001 |
| SMART | SM00490 | helicmild6 | 261 | 341 | 4.4E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 18 | 51 | 1.3E-6 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 207 | 20.147667 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 17 | 51 | 11.546 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 236 | 380 | 25.556675 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 153 | 161 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 23 | 49 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 71 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_010911140.2 | ATP-dependent RNA helicase-like protein DB10 [Elaeis guineensis] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0NBS0 | ATP-dependent RNA helicase-like protein DB10 OS=Cocos nucifera OX=13894 GN=COCNU_14G005640 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology