Basic Information
Locus ID:
COCNU_14G003610
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 8866735 | 8874294 | - | COCNU_14G003610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 38,703.05 Da | 37.34 | 63.42 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 33 | 290 | 2.0E-86 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 308 | 350 | 6.87E-12 | - |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 176 | 282 | 3.24E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 299 | 362 | 5.6E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 177 | 295 | 7.4E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 181 | 283 | 26.92009 | IPR000270 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 274 | 351 | 13.14056 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22670.2 | indoleacetic acid-induced protein 8. IAA8 (IAA8) gene is auxin inducible. | 0 |
| RefSeq | XP_010924571.1 | auxin-responsive protein IAA27 [Elaeis guineensis] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IV47 | Auxin-responsive protein OS=Cocos nucifera OX=13894 GN=COCNU_14G003610 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology