Basic Information
Locus ID:
COCNU_14G003460
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Receptor protein kinase CLAVATA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 8484258 | 8488702 | + | COCNU_14G003460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 109,137.48 Da | 34.00 | 98.99 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 340 | 398 | 1.2E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 171 | 228 | 1.2E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 71 | 3.1E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 269 | 328 | 2.2E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 706 | 972 | 6.1E-44 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 125 | 144 | 1.7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 245 | 267 | 1.5 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 697 | 977 | 1.15E-73 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 79 | 401 | 4.08E-69 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 308 | 603 | 5.1E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 666 | 779 | 1.0E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 229 | 335 | 3.3E-34 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 780 | 985 | 2.6E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 344 | 629 | 7.7E-82 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 228 | 1.8E-50 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 194 | 218 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 314 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 122 | 154 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 484 | 508 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 339 | 363 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 556 | 580 | 330.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 702 | 974 | 5.1E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 170 | 193 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 364 | 386 | 69.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 243 | 267 | 46.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 702 | 982 | 36.060795 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 824 | 836 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_010924539.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Elaeis guineensis] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8K0IV38 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Cocos nucifera OX=13894 GN=COCNU_14G003460 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology