Basic Information
Locus ID:
COCNU_14G003300
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 8199152 | 8205398 | + | COCNU_14G003300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 35,613.40 Da | 48.41 | 70.19 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 39 | 88 | 1.05865E-10 | - |
| CDD | cd03829 | Sina | 166 | 294 | 2.28215E-68 | - |
| Pfam | PF03145 | Seven in absentia protein family | 94 | 293 | 2.1E-82 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 93 | 1.77E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 105 | 297 | 1.63E-51 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 159 | 293 | 2.0E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 94 | 2.3E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 158 | 8.0E-19 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 41 | 88 | 9.45016 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 105 | 165 | 14.654804 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_010924504.1 | E3 ubiquitin-protein ligase SINAT3 [Elaeis guineensis] | 0 |
| Q8S3N1 | E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IUE7 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_14G003300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology