Basic Information
Locus ID:
COCNU_14G002950
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 7420378 | 7423654 | + | COCNU_14G002950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 84,103.56 Da | 42.13 | 109.43 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 145 | 204 | 2.1E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 75 | 131 | 9.6E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 69 | 1.6E-8 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 700 | 761 | 2.41E-7 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 281 | 6.57E-50 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 292 | 572 | 2.43E-43 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 594 | 1.0E-74 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 289 | 7.1E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 184 | 7.5E-42 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 688 | 768 | 2.7E-8 | - |
| SMART | SM00369 | LRR_typ_2 | 241 | 265 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 477 | 501 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 95 | 119 | 26.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 265 | 286 | 52.0 | - |
| SMART | SM00369 | LRR_typ_2 | 525 | 549 | 12.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 95 | 121 | 52.0 | - |
| SMART | SM00369 | LRR_typ_2 | 192 | 216 | 26.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 192 | 219 | 87.0 | - |
| SMART | SM00369 | LRR_typ_2 | 338 | 362 | 100.0 | IPR003591 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 671 | 696 | - | IPR017441 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_010910700.1 | receptor-like protein kinase HSL1 isoform X1 [Elaeis guineensis] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0NC45 | Putative Receptor-like protein kinase HSL1 OS=Cocos nucifera OX=13894 GN=COCNU_14G002950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_14G002950 |
| Brassicaceae | Brassica nigra | 1 | BniB01g044820.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007702 |
| Poaceae | Echinochloa crus-galli | 4 | CH01.1911, CH06.2806, CH06.3125, CH06.822 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G005110 |
| Zosteraceae | Zostera marina | 5 | Zosma02g12200.v3.1, Zosma02g12590.v3.1, Zosma03g11790.v3.1 ... |