Basic Information
Locus ID:
COCNU_14G001460
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Thiamine pyrophosphate enzyme, central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 3871485 | 3878316 | + | COCNU_14G001460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 63,076.26 Da | 34.32 | 91.77 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 378 | 560 | 1.00092E-87 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 19 | 180 | 7.58402E-92 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 16 | 184 | 1.1E-34 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 423 | 548 | 4.0E-15 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 213 | 329 | 5.4E-20 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 16 | 195 | 2.84E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 208 | 354 | 7.36E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 378 | 572 | 2.32E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 12 | 188 | 2.4E-60 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 372 | 559 | 5.4E-57 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 203 | 365 | 2.2E-39 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 10 | 572 | 9.9E-209 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_010924891.1 | pyruvate decarboxylase 1 [Elaeis guineensis] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0NBY0 | pyruvate decarboxylase OS=Cocos nucifera OX=13894 GN=COCNU_14G001460 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology