Basic Information
Locus ID:
COCNU_14G000140
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 283022 | 297636 | - | COCNU_14G000140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 121,944.71 Da | 48.78 | 76.55 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 895 | 927 | 0.0099 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 291 | 570 | 8.54E-12 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 772 | 1031 | 1.83E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 743 | 845 | 1.1E-28 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 292 | 578 | 1.5E-15 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 846 | 1032 | 1.0E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 889 | 927 | 5.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 761 | 799 | 0.54 | IPR001680 |
| SMART | SM00320 | WD40_4 | 846 | 885 | 0.0049 | IPR001680 |
| SMART | SM00320 | WD40_4 | 994 | 1033 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 938 | 977 | 22.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 896 | 936 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 896 | 929 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 914 | 928 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| Coils | Coil | Coil | 680 | 700 | - | - |
| Coils | Coil | Coil | 614 | 634 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_010924824.1 | protein SPA1-RELATED 4 isoform X1 [Elaeis guineensis] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0ITR2 | Protein SPA1-RELATED 4-like OS=Cocos nucifera OX=13894 GN=COCNU_14G000140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology