Basic Information
Locus ID:
COCNU_13G006760
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 20463226 | 20465213 | - | COCNU_13G006760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 63,390.79 Da | 40.66 | 86.21 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 169 | 424 | 7.9E-93 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 3 | 75 | 1.8E-9 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 2 | 80 | 6.4E-6 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 169 | 448 | 91.357445 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 482 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_010939136.1 | BTB/POZ domain-containing protein NPY4 [Elaeis guineensis] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0NB14 | BTB/POZ domain-containing protein NPY4 OS=Cocos nucifera OX=13894 GN=COCNU_13G006760 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology