Basic Information
Locus ID:
COCNU_13G006030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Ubiquitin elongating factor core
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 17078451 | 17096595 | + | COCNU_13G006030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 33,025.79 Da | 50.89 | 91.93 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 233 | 264 | 1.4E-7 | IPR003613 |
| Pfam | PF10408 | Ubiquitin elongating factor core | 29 | 179 | 7.1E-49 | IPR019474 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 263 | 8.83E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 272 | 1.0E-5 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 290 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15400.1 | U-box domain-containing protein. | 0 |
| RefSeq | XP_010904932.1 | probable ubiquitin conjugation factor E4 [Elaeis guineensis] | 0 |
| Q9LF41 | Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana OX=3702 GN=PUB1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0NBK9 | U-box domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_13G006030 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006030 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0360 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0318 |
| Poaceae | Echinochloa crus-galli | 6 | BH01.2372, BH04.1573, BH05.2523, BH06.661, BH07.3213 ... |