Basic Information
Locus ID:
COCNU_13G003830
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 8893471 | 8908916 | + | COCNU_13G003830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 119,277.83 Da | 56.17 | 70.88 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 541 | 845 | 5.92585E-132 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 542 | 844 | 2.3E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 538 | 850 | 1.3E-85 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 534 | 858 | 1.3E-92 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 542 | 847 | 50.646347 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 543 | 558 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 954 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 924 | 954 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 276 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_010939750.1 | ubiquitin carboxyl-terminal hydrolase 15 [Elaeis guineensis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0ITG1 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Cocos nucifera OX=13894 GN=COCNU_13G003830 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology