Basic Information
Locus ID:
COCNU_13G003440
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 7783810 | 7785280 | + | COCNU_13G003440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 38,795.26 Da | 68.38 | 85.10 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 136 | 179 | 6.82253E-19 | - |
| Pfam | PF13639 | Ring finger domain | 136 | 179 | 6.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 136 | 185 | 2.59E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 186 | 7.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 137 | 178 | 7.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 179 | 12.858103 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 248 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010939705.1 | RING-H2 finger protein ATL52 [Elaeis guineensis] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0NB43 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_13G003440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | COCNU_03G007200, COCNU_05G005430, COCNU_13G003440 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696979, gene-LOC103718737, gene-LOC120103675 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1871.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16610 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.2251, BH03.2154 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538300, gene-QOZ80_6BG0491520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0488010.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005854, gene-QYE76_005871 |
| Poaceae | Oryza coarctata | 2 | Oco17G007050, Oco18G007260 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g29370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G211000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701786, Pt_Chr0701822 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G008210, Chr13G009530, Chr14G015580, Chr21G014630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G397500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG038830, gene_TRIDC5BG040980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G248300.1.cds1, TraesCS5B02G246000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb101200_P001, Zm00001eb315620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30560 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30479 |