Basic Information
Locus ID:
COCNU_13G002600
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 5778340 | 5788340 | + | COCNU_13G002600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 69,253.23 Da | 44.05 | 94.08 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 120 | 179 | 2.1E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 68 | 2.1E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 305 | 575 | 5.3E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 283 | 579 | 7.15E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 206 | 5.02E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 598 | 2.5E-70 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 214 | 7.5E-62 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 273 | 380 | 1.7E-39 | - |
| SMART | SM00220 | serkin_6 | 304 | 578 | 2.5E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 304 | 588 | 36.597885 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 310 | 332 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 427 | 439 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_010939572.1 | LRR receptor kinase BAK1 [Elaeis guineensis] | 0 |
| B8BB68 | LRR receptor kinase BAK1 OS=Oryza sativa subsp. indica OX=39946 GN=BAK1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0ISS9 | LRR receptor kinase BAK1 OS=Cocos nucifera OX=13894 GN=COCNU_13G002600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology