Basic Information
Locus ID:
COCNU_13G001910
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Universal stress protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 4293866 | 4298323 | - | COCNU_13G001910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 22,036.07 Da | 39.65 | 102.04 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 21 | 150 | 9.05291E-42 | - |
| Pfam | PF00582 | Universal stress protein family | 22 | 148 | 2.8E-7 | IPR006016 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 22 | 148 | 6.28E-8 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 22 | 151 | 4.1E-10 | IPR014729 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24370.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_019710621.1 | U-box domain-containing protein 52 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0ISP7 | Putative U-box domain-containing protein 53 OS=Cocos nucifera OX=13894 GN=COCNU_13G001910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_13G001910 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.388, BH07.499, CH03.4432 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101760, gene-QOZ80_2BG0155160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0560490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020520 |
| Poaceae | Oryza coarctata | 1 | Oco04G002580 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g05820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G039900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202696 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G272700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG016320, gene_TRIDC6BG021960 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G122700.2, TraesCS6B02G150900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb207960_P003 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12201 |