Basic Information
Locus ID:
COCNU_13G001900
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Nucleolysin TIAR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 4273025 | 4280651 | + | COCNU_13G001900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 43,904.73 Da | 46.89 | 73.65 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 46 | 116 | 5.02704E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 130 | 204 | 3.08966E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 131 | 201 | 1.0E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 46 | 112 | 1.0E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 257 | 311 | 1.2E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 238 | 321 | 3.53E-16 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 123 | 218 | 2.69E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 33 | 122 | 1.75E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 228 | 321 | 1.3E-15 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 126 | 6.2E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 127 | 227 | 1.6E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 251 | 313 | 1.1E-9 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 130 | 203 | 0.0018 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 130 | 203 | 3.4E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 45 | 114 | 1.5E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 44 | 118 | 15.527974 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 129 | 207 | 17.369957 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 258 | 317 | 11.673454 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_010939881.1 | oligouridylate-binding protein 1B isoform X1 [Elaeis guineensis] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IT27 | Oligouridylate-binding protein 1B OS=Cocos nucifera OX=13894 GN=COCNU_13G001900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology