Basic Information
Locus ID:
COCNU_13G000250
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ATP-dependent RNA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 700318 | 706576 | + | COCNU_13G000250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 87,329.27 Da | 56.24 | 68.83 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 385 | 514 | 4.09144E-63 | - |
| CDD | cd00201 | WW | 23 | 52 | 0.00121769 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 397 | 505 | 5.6E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 190 | 360 | 2.2E-49 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 55 | 2.91E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 238 | 521 | 3.4E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 138 | 371 | 1.1E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 372 | 547 | 6.8E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 77 | 2.9E-5 | - |
| SMART | SM00490 | helicmild6 | 425 | 505 | 1.1E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 185 | 388 | 2.2E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.1E-4 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 166 | 194 | 11.168653 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 400 | 544 | 25.825565 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.7383 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 197 | 371 | 31.923967 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 317 | 325 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 677 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.6 | - | 0 |
| RefSeq | XP_010940175.1 | ATP-dependent RNA helicase-like protein DB10 isoform X1 [Elaeis guineensis] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0ISR9 | ATP-dependent RNA helicase-like protein DB10 OS=Cocos nucifera OX=13894 GN=COCNU_13G000250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology