Basic Information
Locus ID:
COCNU_12G006990
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 36133638 | 36146671 | - | COCNU_12G006990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 187,597.80 Da | 47.44 | 94.88 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1402 | 1634 | 7.6E-57 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1402 | 1633 | 8.24E-54 | IPR035983 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1138 | 1402 | 1.7E-39 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 102 | 535 | 6.44E-32 | IPR016024 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1428 | 1526 | 6.9E-24 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 542 | 3.3E-46 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1402 | 1561 | 6.9E-24 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1565 | 1644 | 4.0E-14 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1089 | 1317 | 4.3E-36 | - |
| SMART | SM00119 | hect_3 | 1159 | 1649 | 2.6E-35 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1402 | 1636 | 41.346142 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1161 | 1401 | 21.861725 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 71 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_008805036.2 | E3 ubiquitin-protein ligase UPL4-like [Phoenix dactylifera] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0IRZ0 | HECT-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_12G006990 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology