Basic Information
Locus ID:
COCNU_12G006970
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 36109693 | 36116961 | + | COCNU_12G006970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 201,935.78 Da | 42.26 | 68.21 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 953 | 1037 | 2.19452E-28 | - |
| Pfam | PF00855 | PWWP domain | 953 | 1036 | 8.0E-18 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 952 | 1074 | 2.29E-25 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 946 | 1047 | 7.1E-25 | - |
| SMART | SM00293 | PWWP_4 | 953 | 1014 | 3.0E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 955 | 1016 | 14.863379 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1384 | 1414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1614 | 1647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1709 | 1724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1739 | 1753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1400 | 1414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1430 | 1456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1791 | 1806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1817 | 1832 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1684 | 1834 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_010909545.1 | uncharacterized protein LOC105035631 isoform X1 [Elaeis guineensis] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0ITG5 | PWWP domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_12G006970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology