Basic Information
Locus ID:
COCNU_12G006860
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
CPK13
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 35842549 | 35856342 | - | COCNU_12G006860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 61,259.04 Da | 40.65 | 84.86 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 70 | 328 | 6.68995E-136 | - |
| Pfam | PF13499 | EF-hand domain pair | 375 | 435 | 1.6E-10 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 73 | 329 | 5.4E-73 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 447 | 512 | 9.7E-16 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 69 | 335 | 7.55E-85 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 357 | 538 | 2.42E-43 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 157 | 337 | 1.7E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 338 | 515 | 3.3E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 72 | 156 | 1.9E-25 | - |
| SMART | SM00220 | serkin_6 | 71 | 329 | 1.4E-96 | IPR000719 |
| SMART | SM00054 | efh_1 | 486 | 514 | 2.3E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 376 | 404 | 5.0E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 448 | 476 | 1.0E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 412 | 440 | 0.69 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 408 | 443 | 9.63171 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 444 | 479 | 14.42972 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 71 | 329 | 47.565868 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 482 | 517 | 14.011288 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 372 | 407 | 15.852385 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 385 | 397 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 457 | 469 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 191 | 203 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 495 | 507 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 77 | 100 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_010907403.1 | calcium-dependent protein kinase 3 [Elaeis guineensis] | 0 |
| Q8LPZ7 | Calcium-dependent protein kinase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0ISA4 | Calcium-dependent protein kinase 3 OS=Cocos nucifera OX=13894 GN=COCNU_12G006860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology