Basic Information
Locus ID:
COCNU_12G004790
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
zinc finger, C3HC4 type, domain containing protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 31131810 | 31132718 | + | COCNU_12G004790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 33,342.42 Da | 68.93 | 54.60 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 167 | 208 | 1.02131E-24 | - |
| Pfam | PF13639 | Ring finger domain | 166 | 208 | 4.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 214 | 2.16E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 214 | 4.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 167 | 207 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 208 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 290 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_008786879.2 | probable E3 ubiquitin-protein ligase RHC1A [Phoenix dactylifera] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N9Z7 | E3 ubiquitin-protein ligase RING1-like protein OS=Cocos nucifera OX=13894 GN=COCNU_12G004790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology