Basic Information
Locus ID:
COCNU_12G003650
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 27728440 | 27745888 | + | COCNU_12G003650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 53,447.97 Da | 59.27 | 66.26 | -1.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 7 | 30 | 1.6E-4 | IPR000571 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 4 | 35 | 4.91E-5 | IPR036855 |
| Gene3D | G3DSA:4.10.1000.10 | - | 2 | 36 | 6.1E-8 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 6 | 32 | 13.168777 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 315 | - | - |
| Coils | Coil | Coil | 169 | 203 | - | - |
| Coils | Coil | Coil | 141 | 161 | - | - |
| Coils | Coil | Coil | 214 | 234 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21810.1 | Zinc finger C-x8-C-x5-C-x3-H type family protein. | 0 |
| RefSeq | XP_038988182.1 | zinc finger CCCH domain-containing protein 13-like isoform X1 [Phoenix dactylifera] | 0 |
| Q6H7U2 | Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0161200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IR74 | Zinc finger CCCH domain-containing protein 13 OS=Cocos nucifera OX=13894 GN=COCNU_12G003650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21025 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25786 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037475 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41795, Sbi_jg48332 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27662 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018188, gene:ENSEOMG00000036687 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0016150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018710 |
| Apiaceae | Apium graveolens | 1 | Ag11G03316 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G003650, scaffold019629G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715485, gene-LOC120112702 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.235.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G30236 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020800m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g049610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2455 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2540, Cgl02G2552 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g00670, gene.Cymno17g06030 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g03920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2040 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009920 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G28328, Lb5G28334 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2726, AH07.440, BH06.2524, BH07.564, CH06.2823 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0102410, gene-QOZ80_2BG0155680 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0565380.1, HORVU.MOREX.r3.7HG0732480.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020675, gene-QYE76_035923 |
| Poaceae | Oryza coarctata | 4 | Oco03G002980, Oco04G002930, Oco11G015380, Oco12G015700 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g06584.2, LOC_Os06g46890.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G045900, gene-BS78_10G233700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202535, Pt_Chr0401200 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr05G009870, Chr06G034660, Chr10G020550, Chr11G002080 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G285400, Tel7E01G761200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG018200, gene_TRIDC6BG024070 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G135300.1, TraesCS6B02G163300.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb207650_P006, Zm00001eb225260_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-29916, nbis-gene-33695, nbis-gene-9725 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12224, Zma_g14982, Zma_g31014, Zma_g33266 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.640, evm.TU.LG01.641, evm.TU.LG04.130 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g01820 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1488, evm.TU.Scaffold_9_RagTag.1351 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14855, nbisL1-mrna-8796 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11007, nbisL1-mrna-21327 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.828, evm.TU.utg000006l.854 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009716, Maker00013448 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10381, nbisL1-mrna-1230 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4739 |
| Salicaceae | Populus euphratica | 1 | populus_peu22670 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636631 |
| Solanaceae | Solanum chilense | 1 | SOLCI000832900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007567 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.20444_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1350 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20360.v3.1 |