Basic Information
Locus ID:
COCNU_12G003090
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 26206165 | 26224501 | + | COCNU_12G003090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 85,866.82 Da | 51.54 | 70.21 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 497 | 743 | 1.25973E-131 | - |
| CDD | cd00130 | PAS | 125 | 226 | 5.60689E-14 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 492 | 742 | 1.4E-67 | IPR001245 |
| Pfam | PF00989 | PAS fold | 117 | 223 | 1.1E-11 | IPR013767 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 467 | 741 | 1.19E-84 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 114 | 226 | 9.6E-20 | IPR035965 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 484 | 568 | 1.0E-30 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 125 | 230 | 3.5E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 569 | 775 | 2.1E-64 | - |
| SMART | SM00091 | pas_2 | 116 | 182 | 6.8E-9 | IPR000014 |
| SMART | SM00220 | serkin_6 | 491 | 744 | 4.8E-57 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 114 | 226 | 4.5E-14 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 491 | 751 | 43.67902 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 114 | 185 | 15.640215 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 610 | 622 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 670 | 692 | 1.5E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 565 | 578 | 1.5E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 651 | 661 | 1.5E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 714 | 736 | 1.5E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 604 | 622 | 1.5E-11 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 105 | - | - |
| Coils | Coil | Coil | 5 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67890.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_010931763.2 | RGS domain-containing serine/threonine-protein kinase A isoform X2 [Elaeis guineensis] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IR88 | RGS domain-containing serine/threonine-protein kinase A OS=Cocos nucifera OX=13894 GN=COCNU_12G003090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology