Basic Information
Locus ID:
COCNU_12G002990
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 25947683 | 25952379 | + | COCNU_12G002990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 66,685.92 Da | 65.00 | 58.75 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 428 | 509 | 7.0E-20 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 428 | 510 | 9.3E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 378 | - | - |
| Coils | Coil | Coil | 417 | 454 | - | - |
| Coils | Coil | Coil | 466 | 487 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.3 | - | 0 |
| RefSeq | XP_010931744.1 | eukaryotic translation initiation factor 5B [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0N9U7 | Eukaryotic translation initiation factor 5B OS=Cocos nucifera OX=13894 GN=COCNU_12G002990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology