Basic Information
Locus ID:
COCNU_12G002850
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 25400259 | 25414262 | + | COCNU_12G002850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 57,688.67 Da | 53.05 | 83.87 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 330 | 507 | 5.53252E-112 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 9 | 103 | 5.4E-14 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 330 | 436 | 4.0E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 334 | 462 | 3.14E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 318 | 509 | 6.1E-74 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 122 | 6.7E-37 | - |
| SMART | SM00232 | pad1_6 | 328 | 460 | 4.2E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 332 | 463 | 27.83662 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 325 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_010931734.1 | AMSH-like ubiquitin thioesterase 3 isoform X1 [Elaeis guineensis] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0NAG1 | AMSH-like ubiquitin thioesterase 3 OS=Cocos nucifera OX=13894 GN=COCNU_12G002850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology