Basic Information
Locus ID:
COCNU_12G001970
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 22773893 | 22780517 | - | COCNU_12G001970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 88,261.92 Da | 54.06 | 65.15 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 314 | 342 | 9.4E-10 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 348 | 375 | 8.0E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 307 | 343 | 9.42E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 346 | 377 | 9.68E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 345 | 377 | 2.8E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 306 | 344 | 3.7E-15 | - |
| SMART | SM00547 | zf_4 | 316 | 340 | 5.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 349 | 373 | 5.5E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 314 | 343 | 10.127614 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 347 | 376 | 9.585588 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 351 | 370 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 318 | 337 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 667 | 687 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 484 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010931605.1 | uncharacterized protein LOC105052481 [Elaeis guineensis] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IQY0 | Zinc finger protein OS=Cocos nucifera OX=13894 GN=COCNU_12G001970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology