Basic Information
Locus ID:
COCNU_12G001920
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 22578941 | 22596207 | + | COCNU_12G001920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 31,443.57 Da | 51.17 | 56.45 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 210 | 266 | 2.5E-26 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 161 | 204 | 1.3E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 33 | 107 | 2.6E-19 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 30 | 96 | 2.09E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 98 | 155 | 4.32E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 161 | 210 | 6.6E-12 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 234 | 271 | 3.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 233 | 2.4E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 162 | 204 | 6.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 162 | 205 | 12.017182 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 97 | 161 | 33.783707 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 26 | 95 | 24.511669 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_029116267.1 | E3 ubiquitin-protein ligase MIEL1 [Elaeis guineensis] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0NA63 | E3 ubiquitin-protein ligase MIEL1 OS=Cocos nucifera OX=13894 GN=COCNU_12G001920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology