Basic Information
Locus ID:
COCNU_12G001850
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 22236759 | 22240301 | + | COCNU_12G001850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 38,387.99 Da | 44.92 | 99.53 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 10 | 49 | 3.8E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 68 | 114 | 3.4E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 89 | 322 | 1.47E-25 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 43 | 2.62E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 47 | 9.5E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 48 | 338 | 9.2E-87 | IPR032675 |
| SMART | SM00256 | fbox_2 | 11 | 52 | 4.5E-4 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010941793.1 | transport inhibitor response 1-like protein Os05g0150500 [Elaeis guineensis] | 0 |
| Q0DKP3 | Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IQW0 | F-box domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_12G001850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology