Basic Information
Locus ID:
COCNU_12G000960
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Peroxisome biogenesis protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 16856756 | 16895300 | + | COCNU_12G000960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 116,886.07 Da | 41.25 | 101.23 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 756 | 919 | 9.17079E-23 | - |
| CDD | cd00009 | AAA | 496 | 577 | 1.06803E-10 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 503 | 648 | 1.1E-13 | IPR003959 |
| Pfam | PF09262 | Peroxisome biogenesis factor 1, N-terminal | 72 | 117 | 1.1E-7 | IPR015342 |
| Pfam | PF17862 | AAA+ lid domain | 961 | 996 | 1.6E-9 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 790 | 917 | 5.9E-39 | IPR003959 |
| SUPERFAMILY | SSF54585 | Cdc48 domain 2-like | 72 | 117 | 6.15E-7 | IPR029067 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 752 | 1032 | 5.87E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 475 | 734 | 1.18E-31 | IPR027417 |
| Gene3D | G3DSA:3.10.330.10 | - | 59 | 119 | 8.9E-10 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 451 | 651 | 7.9E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 748 | 919 | 2.1E-62 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 652 | 731 | 3.3E-8 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 921 | 1041 | 2.3E-15 | - |
| SMART | SM00382 | AAA_5 | 786 | 922 | 1.0E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 499 | 652 | 2.2E-13 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 890 | 908 | - | IPR003960 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08470.1 | peroxisome 1. an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals. | 0 |
| RefSeq | XP_010941607.1 | peroxisome biogenesis protein 1 isoform X1 [Elaeis guineensis] | 0 |
| Q9FNP1 | Peroxisomal ATPase PEX1 OS=Arabidopsis thaliana OX=3702 GN=PEX1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IR68 | Peroxin-1 OS=Cocos nucifera OX=13894 GN=COCNU_12G000960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12047 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_25098, gene_25100 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19308, Sbi_jg43876 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18047 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014624 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl65601, Sgl69904 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014450, gene:ENSEOMG00000019828 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001070, CQ.Regalona.r1.2BG0002130 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30107880, pistato.v30195380, pistato.v30295310 |
| Apiaceae | Apium graveolens | 1 | Ag3G01834 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G000960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719364 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2379.V1.1, AsparagusV1_06.88.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G28551 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08470.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012497m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g34430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g052760.2N, BniB08g003830.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1659 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1718 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g05620 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0970s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4664 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1585 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00019879, Pov_00023082, Pov_00038518 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05395 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2355, BH08.2505, CH08.2692 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0640400, gene-QOZ80_8BG0669000 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0495920.1, HORVU.MOREX.r3.5HG0495930.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030679, gene-QYE76_036245 |
| Poaceae | Oryza coarctata | 1 | Oco15G014430 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g44240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G224400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403396 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr20G003110, Chr20G003120, Chr29G000510 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G480200, Tel7E01G479600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5BG048630, gene_TRIDC7AG036330 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G301500.1, TraesCS5B02G299200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb176300_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42858 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23424 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.896, evm.TU.LG09.1078 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g14830 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1214 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-6856, nbisL1-mrna-6919 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5924 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17021 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.358 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004222 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16356 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18054 |
| Salicaceae | Populus euphratica | 1 | populus_peu02837 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627175 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017996 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0572 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18910.v3.1 |