halophFGD

Basic Information

Locus ID: COCNU_12G000540

Species & Taxonomic ID: Cocos nucifera & 13894

Genome Assembly: GCA_008124465.1

Description: Belongs to the NPH3 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr12	10245457	10263175	+	COCNU_12G000540

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.68	71,507.90 Da	45.90	96.92	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18312	BTB_POZ_NPY3-like	38	139	8.66679E-47	-
Pfam	PF00651	BTB/POZ domain	43	131	9.6E-10	IPR000210
Pfam	PF03000	NPH3 family	229	491	7.7E-94	IPR027356
SUPERFAMILY	SSF54695	POZ domain	33	131	1.8E-19	IPR011333
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	29	135	4.6E-14	IPR011333
SMART	SM00225	BTB_4	45	144	4.0E-5	IPR000210
ProSiteProfiles	PS50097	BTB domain profile.	45	114	11.957241	IPR000210
ProSiteProfiles	PS51649	NPH3 domain profile.	229	515	92.194267	IPR027356
MobiDBLite	mobidb-lite	consensus disorder prediction	614	645	-	-
Coils	Coil	Coil	563	590	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G30440.1	Phototropic-responsive NPH3 family protein.
RefSeq	XP_010941534.1	BTB/POZ domain-containing protein At1g30440 isoform X1 [Elaeis guineensis]
Swiss-Prot	Q9S9Q9	BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2
TrEMBL	A0A8K0IQR1	BTB/POZ domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_12G000540 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg14967, jg20811, jg22317, jg3479
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14297, gene_664
Amaranthaceae	Atriplex hortensis	2	Ah016124, Ah032856
Amaranthaceae	Beta vulgaris	2	BVRB_2g040100, BVRB_8g187520
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg23977, Sbi_jg25693, Sbi_jg29712, Sbi_jg29713 ... Sbi_jg43232, Sbi_jg9529
Amaranthaceae	Salicornia europaea	3	Seu_jg12227, Seu_jg18664, Seu_jg19101
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004412, GOSA_00028435
Amaranthaceae	Suaeda glauca	5	Sgl44921, Sgl45043, Sgl49813, Sgl66473, Sgl70807
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000014291, gene:ENSEOMG00000020388 ... gene:ENSEOMG00000034448, gene:ENSEOMG00000048405, gene:ENSEOMG00000051633
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0009390, CQ.Regalona.r1.2AG0006750 ... CQ.Regalona.r1.8AG0011020, CQ.Regalona.r1.8BG0013150
Anacardiaceae	Pistacia vera	3	pistato.v30076130, pistato.v30170970, pistato.v30272580
Apiaceae	Apium graveolens	7	Ag11G04946, Ag2G00706, Ag3G02676, Ag6G01148, Ag7G00263 ... Ag7G00982, Ag8G00740
Arecaceae	Cocos nucifera	6	COCNU_04G007390, COCNU_06G009760, COCNU_06G020580 ... COCNU_12G000540, COCNU_14G006430, COCNU_14G008730
Arecaceae	Phoenix dactylifera	6	gene-LOC103695810, gene-LOC103696802, gene-LOC103703645 ... gene-LOC103710509, gene-LOC103714620, gene-LOC103720574
Asparagaceae	Asparagus officinalis	4	AsparagusV1_06.1912.V1.1, AsparagusV1_06.292.V1.1 ... AsparagusV1_07.3456.V1.1, AsparagusV1_07.3944.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G18318, Ftri17G14064, Ftri17G21018, Ftri18G19124 ... Ftri6G20680, Ftri6G28686
Brassicaceae	Arabidopsis thaliana	3	AT1G30440.1, AT5G03250.1, AT5G13600.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007010m.g.v1.0, Thhalv10013087m.g.v1.0 ... Thhalv10015450m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g26260.v2.2, Sp6g30430.v2.2, Sp6g39480.v2.2
Brassicaceae	Brassica nigra	6	BniB01g024150.2N, BniB02g048950.2N, BniB02g057140.2N ... BniB02g057980.2N, BniB04g045960.2N, BniB08g001010.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0606, Ceq04G0538, Ceq08G1325
Casuarinaceae	Casuarina glauca	3	Cgl02G0620, Cgl04G0636, Cgl08G1350
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g15720, gene.Cymno07g06610, gene.Cymno07g11230
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g01790, gene.Thate04g17350, gene.Thate05g03540 ... gene.Thate07g18730
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5946
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1435, evm.TU.LG02.1038
Plantaginaceae	Plantago ovata	3	Pov_00005103, Pov_00006334, Pov_00013065
Plumbaginaceae	Limonium bicolor	4	Lb2G08454, Lb2G08467, Lb4G25214, Lb5G29321
Poaceae	Echinochloa crus-galli	12	AH01.1259, AH02.3489, AH08.243, AH09.2429, BH01.1464 ... BH02.3468, BH08.224, BH09.2650, CH02.3008, CH06.2664, CH08.266, CH09.2871
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035750, gene-QOZ80_1BG0085780 ... gene-QOZ80_3AG0224330, gene-QOZ80_3BG0269330, gene-QOZ80_4BG0333240, gene-QOZ80_8AG0616330, gene-QOZ80_8BG0643870
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.2HG0169280.1, HORVU.MOREX.r3.2HG0207070.1 ... HORVU.MOREX.r3.3HG0293570.1, HORVU.MOREX.r3.5HG0428840.1, HORVU.MOREX.r3.5HG0508410.2, HORVU.MOREX.r3.7HG0702520.1, HORVU.MOREX.r3.7HG0732100.1
Poaceae	Lolium multiflorum	5	gene-QYE76_001021, gene-QYE76_033128, gene-QYE76_046633 ... gene-QYE76_056125, gene-QYE76_063529
Poaceae	Oryza coarctata	9	Oco01G021900, Oco02G022470, Oco05G018850, Oco06G019640 ... Oco07G016950, Oco15G001420, Oco16G001530, Oco23G010370, Oco24G010220
Poaceae	Oryza sativa	2	LOC_Os04g54400.1, LOC_Os08g03650.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G144800, gene-BS78_03G297300 ... gene-BS78_06G247800, gene-BS78_07G032900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104482, Pt_Chr0402533, Pt_Chr0601628, Pt_Chr0704437
Poaceae	Sporobolus alterniflorus	13	Chr01G009420, Chr02G007940, Chr03G017640, Chr04G024840 ... Chr05G025570, Chr07G023650, Chr12G027600, Chr16G000990, Chr17G000940, Chr20G013240, Chr23G005390, Chr26G016420, Chr29G012100
Poaceae	Thinopyrum elongatum	5	Tel2E01G896900, Tel3E01G512200, Tel5E01G099600 ... Tel5E01G597200, Tel7E01G532200
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG073850, gene_TRIDC2BG080570 ... gene_TRIDC3AG046190, gene_TRIDC3BG052520, gene_TRIDC5AG006520, gene_TRIDC5AG054940, gene_TRIDC5BG007590, gene_TRIDC5BG058770, gene_TRIDC7AG043160, gene_TRIDC7BG034430
Poaceae	Triticum aestivum	15	TraesCS2A02G526900.1, TraesCS2B02G557300.2 ... TraesCS2D02G529600.1, TraesCS3A02G317300.1, TraesCS3B02G349200.1, TraesCS3D02G314000.1, TraesCS5A02G042600.1, TraesCS5A02G375500.3, TraesCS5B02G046200.2, TraesCS5B02G377600.1, TraesCS5D02G051100.1, TraesCS5D02G385100.1, TraesCS7A02G309700.1, TraesCS7B02G209700.1, TraesCS7D02G306400.1
Poaceae	Zea mays	4	Zm00001eb050610_P001, Zm00001eb069180_P001 ... Zm00001eb151470_P002, Zm00001eb261890_P001
Poaceae	Zoysia japonica	6	nbis-gene-11744, nbis-gene-20462, nbis-gene-22958 ... nbis-gene-39166, nbis-gene-39601, nbis-gene-41498
Poaceae	Zoysia macrostachya	6	Zma_g20524, Zma_g22424, Zma_g23566, Zma_g3195, Zma_g872 ... Zma_g8779
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1800, evm.TU.LG11.1153, evm.TU.LG18.1048 ... evm.TU.LG20.827
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g06230, gene.Posoc08g07300, gene.Posoc08g08310
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.865, evm.TU.Scaffold_2_RagTag.876
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-25031, nbisL1-mrna-4329
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18812, nbisL1-mrna-5235
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-19229, nbisL1-mrna-9990
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.879, evm.TU.utg000022l.56
Rhizophoraceae	Kandelia obovata	1	Maker00016202
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12632, nbisL1-mrna-54
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10284, nbisL1-mrna-5858
Salicaceae	Populus euphratica	8	populus_peu00938, populus_peu06262, populus_peu11692 ... populus_peu17837, populus_peu20097, populus_peu25751, populus_peu25752, populus_peu37976
Solanaceae	Lycium barbarum	3	gene-LOC132606889, gene-LOC132631572, gene-LOC132633677
Solanaceae	Solanum chilense	3	SOLCI000078400, SOLCI000597600, SOLCI001415200
Solanaceae	Solanum pennellii	3	gene-LOC107002418, gene-LOC107011567, gene-LOC107029902
Tamaricaceae	Reaumuria soongarica	3	gene_14197, gene_4526, gene_9700
Tamaricaceae	Tamarix chinensis	2	TC06G1133, TC11G2004
Zosteraceae	Zostera marina	3	Zosma01g35710.v3.1, Zosma04g21970.v3.1, Zosma06g04930.v3.1