Basic Information
Locus ID:
COCNU_12G000320
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 7187017 | 7201170 | - | COCNU_12G000320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 133,384.72 Da | 68.39 | 60.19 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 745 | 904 | 1.08182E-54 | - |
| CDD | cd00201 | WW | 23 | 52 | 3.99326E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 870 | 895 | 6.3E-6 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 757 | 839 | 1.9E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 550 | 720 | 7.4E-48 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 2.6E-6 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 509 | 733 | 1.44E-69 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 56 | 2.74E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 741 | 930 | 7.78E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 737 | 937 | 2.6E-53 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 59 | 1.4E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 501 | 736 | 1.7E-84 | IPR027417 |
| SMART | SM00487 | ultradead3 | 545 | 748 | 7.4E-64 | IPR014001 |
| SMART | SM00490 | helicmild6 | 781 | 895 | 2.3E-21 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.1E-6 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 526 | 554 | 9.833387 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 557 | 731 | 31.056307 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 760 | 934 | 21.035381 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.3687 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 677 | 685 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1155 | 1174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1023 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 947 | 1206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 295 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_010941500.1 | DEAD-box ATP-dependent RNA helicase 46 [Elaeis guineensis] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IQN0 | DEAD-box ATP-dependent RNA helicase 46 OS=Cocos nucifera OX=13894 GN=COCNU_12G000320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology