Basic Information
Locus ID:
COCNU_11G013450
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 61167188 | 61172753 | - | COCNU_11G013450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 35,509.95 Da | 41.43 | 89.75 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 185 | 286 | 4.19025E-49 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 69 | 174 | 1.7E-21 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 201 | 277 | 2.2E-24 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 82 | 311 | 1.61E-47 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 16 | 188 | 3.55E-29 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 35 | 174 | 1.1E-37 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 175 | 314 | 3.7E-45 | IPR027417 |
| SMART | SM00487 | ultradead3 | 63 | 238 | 3.7E-21 | IPR014001 |
| SMART | SM00490 | helicmild6 | 196 | 277 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 169 | 316 | 23.146648 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 44 | 72 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 75 | 231 | 15.432117 | IPR014001 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_010929385.1 | eukaryotic initiation factor 4A-15 [Elaeis guineensis] | 0 |
| Q40468 | Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IQX8 | Eukaryotic initiation factor 4A-3 OS=Cocos nucifera OX=13894 GN=COCNU_11G013450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology