Basic Information
Locus ID:
COCNU_11G013340
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 60944639 | 60948893 | - | COCNU_11G013340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 27,382.96 Da | 53.63 | 92.18 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 68 | 116 | 3.48592E-19 | - |
| Pfam | PF12906 | RING-variant domain | 68 | 115 | 4.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 119 | 6.56E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 120 | 1.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 67 | 116 | 1.3E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 60 | 122 | 20.150686 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.4 | - | 0 |
| RefSeq | XP_010929371.1 | E3 ubiquitin-protein ligase MARCH8 isoform X3 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0NA52 | E3 ubiquitin-protein ligase MARCH8 OS=Cocos nucifera OX=13894 GN=COCNU_11G013340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology