Basic Information
Locus ID:
COCNU_11G012340
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
DNA repair protein RAD23-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 58525106 | 58540391 | - | COCNU_11G012340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 37,628.73 Da | 52.57 | 78.90 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.33826E-29 | - |
| Pfam | PF09280 | XPC-binding domain | 253 | 308 | 1.1E-21 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.9E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 151 | 185 | 4.8E-13 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 249 | 315 | 1.24E-21 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 84 | 3.22E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 143 | 195 | 5.42E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 140 | 191 | 8.6E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.4E-25 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 245 | 309 | 2.7E-26 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 7.1E-21 | IPR000626 |
| SMART | SM00727 | CBM | 249 | 294 | 2.2E-4 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 342 | 3.9E-103 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 144 | 188 | 11.968563 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.17078 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 279 | 301 | 2.0E-11 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 328 | 344 | 2.0E-11 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 107 | - | - |
| Coils | Coil | Coil | 280 | 300 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_029122110.1 | ubiquitin receptor RAD23b isoform X2 [Elaeis guineensis] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A8K0IQ68 | Ubiquitin receptor RAD23 OS=Cocos nucifera OX=13894 GN=COCNU_11G012340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology