Basic Information
Locus ID:
COCNU_11G011990
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 57745088 | 57764317 | + | COCNU_11G011990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 96,819.16 Da | 50.58 | 64.01 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 604 | 648 | 0.00500122 | IPR002999 |
| SUPERFAMILY | SSF48371 | ARM repeat | 49 | 273 | 1.95E-7 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 601 | 643 | 3.01E-7 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 599 | 649 | 4.9E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 860 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 888 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 593 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.1 | 0 | |
| RefSeq | XP_029122100.1 | uncharacterized protein LOC105050720 [Elaeis guineensis] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0NA09 | Putative abhydrolase domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_11G011990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology