Basic Information
Locus ID:
COCNU_11G010750
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 55019047 | 55031591 | - | COCNU_11G010750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 65,197.58 Da | 44.59 | 93.68 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 27 | 326 | 3.66333E-173 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 34 | 321 | 3.4E-5 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 352 | 491 | 7.7E-12 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 344 | 495 | 2.09E-17 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 26 | 326 | 3.66E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 25 | 327 | 3.8E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 333 | 495 | 2.6E-23 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 27 | 327 | 31.877142 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 573 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_010928867.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Elaeis guineensis] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A8K0IQF5 | glycerophosphodiester phosphodiesterase OS=Cocos nucifera OX=13894 GN=COCNU_11G010750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology