Basic Information
Locus ID:
COCNU_11G009220
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 51420526 | 51439283 | - | COCNU_11G009220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 102,560.64 Da | 49.69 | 74.12 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 178 | 485 | 2.95651E-157 | - |
| Pfam | PF01753 | MYND finger | 73 | 110 | 1.6E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 179 | 484 | 3.8E-42 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 175 | 497 | 1.75E-86 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 71 | 114 | 7.15E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 175 | 495 | 6.7E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 65 | 114 | 4.0E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 179 | 487 | 47.484856 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 73 | 110 | 12.665646 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 180 | 195 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 73 | 110 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 746 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_010928622.1 | ubiquitin carboxyl-terminal hydrolase 18 [Elaeis guineensis] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IQ65 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Cocos nucifera OX=13894 GN=COCNU_11G009220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology