Basic Information
Locus ID:
COCNU_11G009130
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 51231433 | 51233929 | - | COCNU_11G009130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 33,352.63 Da | 35.56 | 97.93 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 183 | 257 | 1.9E-10 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 120 | 138 | 0.0013 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 52 | 103 | 1.6E-11 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 267 | 8.15E-48 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 152 | 272 | 1.2E-19 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 151 | 7.3E-33 | IPR036770 |
| SMART | SM00248 | ANK_2a | 226 | 255 | 0.002 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 1.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 148 | 1.5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 183 | 212 | 7.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0095 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 226 | 257 | 9.224194 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.12526 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.038475 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 183 | 215 | 11.59431 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.462976 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 226 | 258 | 10.41907 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.48422 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 183 | 208 | 11.187517 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.7044 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.328365 | - |
| PRINTS | PR01415 | Ankyrin repeat signature | 242 | 256 | 8.3E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 184 | 199 | 8.3E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_010928614.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X2 [Elaeis guineensis] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0N948 | Putative E3 ubiquitin-protein ligase XBOS32 OS=Cocos nucifera OX=13894 GN=COCNU_11G009130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology