Basic Information
Locus ID:
COCNU_11G007980
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 48691853 | 48699841 | + | COCNU_11G007980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 53,471.23 Da | 27.14 | 106.18 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 388 | 463 | 5.31213E-24 | - |
| CDD | cd00030 | C2 | 208 | 310 | 8.32864E-25 | - |
| Pfam | PF00168 | C2 domain | 386 | 463 | 8.2E-21 | IPR000008 |
| Pfam | PF00168 | C2 domain | 207 | 310 | 7.4E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 204 | 336 | 2.83E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 383 | 463 | 9.82E-26 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 384 | 475 | 8.4E-25 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 199 | 334 | 1.8E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 387 | 477 | 3.7E-16 | IPR000008 |
| SMART | SM00239 | C2_3c | 207 | 307 | 2.0E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 188 | 308 | 20.065802 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 369 | 477 | 18.389801 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 40 | 237 | 13.717004 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 429 | 442 | 1.6E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 403 | 415 | 1.6E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 451 | 459 | 1.6E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_010928308.1 | synaptotagmin-5 [Elaeis guineensis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IP75 | Synaptotagmin-5 OS=Cocos nucifera OX=13894 GN=COCNU_11G007980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology