Basic Information
Locus ID:
COCNU_11G007850
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 48292789 | 48310185 | - | COCNU_11G007850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 62,484.49 Da | 43.43 | 86.64 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 399 | 0.0054 | IPR001680 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 428 | 564 | 2.35E-7 | IPR011044 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 1 | 491 | 4.47E-35 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 232 | 549 | 2.2E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 131 | 6.8E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 318 | 358 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 400 | 4.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 491 | 5.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 315 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 30 | 70 | 19.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 368 | 399 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 368 | 399 | 11.377324 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 577 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.3 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_010928336.1 | protein TPR3 isoform X2 [Elaeis guineensis] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IPY1 | WD_REPEATS_REGION domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_11G007850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11622 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011711, gene:ENSEOMG00000016261 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30099560, pistato.v30099680, pistato.v30099790 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700149 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.1301.V1.1, AsparagusV1_01.131.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G19082 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028234 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.491 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054200 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G011510 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25450 |
| Salicaceae | Populus euphratica | 1 | populus_peu12947 |
| Solanaceae | Solanum chilense | 3 | SOLCI001994800, SOLCI005587600, SOLCI005587700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013672, gene-LOC107014302 |