Basic Information
Locus ID:
COCNU_11G005030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
PHD finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 35701517 | 35710162 | - | COCNU_11G005030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 17,627.67 Da | 89.80 | 47.90 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15613 | PHD_AL_plant | 103 | 153 | 5.0183E-29 | IPR044104 |
| Pfam | PF00628 | PHD-finger | 104 | 152 | 5.1E-11 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 92 | 154 | 1.37E-17 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 152 | 6.1E-26 | IPR013083 |
| SMART | SM00249 | PHD_3 | 103 | 151 | 5.5E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 101 | 153 | 9.685801 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 104 | 150 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 74 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20510.2 | - | 0 |
| RefSeq | XP_029118215.1 | PHD finger protein ALFIN-LIKE 5 isoform X5 [Elaeis guineensis] | 0 |
| B8BJV8 | PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35671 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0INT9 | PHD finger protein ALFIN-LIKE 5 OS=Cocos nucifera OX=13894 GN=COCNU_11G005030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 4 | Ag1G00638, Ag1G00639, Ag7G00403, Ag7G01840 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005030 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26289 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5333 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG067680 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6903 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7207 |