Basic Information
Locus ID:
COCNU_11G004050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 25827468 | 25843035 | + | COCNU_11G004050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 24,738.61 Da | 66.15 | 74.85 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 18 | 61 | 1.23492E-21 | - |
| Pfam | PF13639 | Ring finger domain | 18 | 61 | 4.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 72 | 3.26E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 67 | 1.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 19 | 60 | 2.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 19 | 61 | 12.002429 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_008795582.4 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Phoenix dactylifera] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N981 | Putative Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Cocos nucifera OX=13894 GN=COCNU_11G004050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology